numbat

cranv1.5.2

Haplotype-Aware CNV Analysis from scRNA-Seq. A computational method that infers copy number variations (CNVs) in cancer scRNA-seq data and reconstructs the tumor phylogeny. 'numbat' integrates signals from gene expression, allelic ratio, and population haplotype structures to accurately infer allele-specific CNVs in single cells and reconstruc

License MIT + file LICENSE0 versions1 maintainers34 deps128 weekly dl
kharchenkolab/numbat/
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[email protected] is safe to use (health: 52/100)

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20/25
maintenance
3/20
popularity
25/25
security
0/15
maturity
4/15
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0
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Dependencies (34)
MatrixapecaToolsdata.tabledendextenddplyrGenomicRangesggplot2ggraphggtreegluehahmmrigraphIRangesloggermagrittrmethodsoptparseparallelparallelDistpatchworkpurrrRcppRhpcBLASctlR.utilsscalesscistreerstats4stringrtibbletidygraphtidyrvcfRzoo
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First published · 2026-02-04 09:25:39

Last updated · 2026-02-04T07:20:15+00:00