{"package":"alphadia","ecosystem":"pypi","latest_version":"2.1.1","description":"A novel proteomics search engine for DIA data based on end-to-end transfer learning.","license":"Apache-2.0","license_risk":"permissive","commercial_use_notes":"Permissive: commercial closed-source use OK; preserve the copyright notice.","homepage":"https://pypi.org/project/alphadia/","repository":"","downloads_weekly":70,"health":{"score":62,"risk":"moderate","breakdown":{"maintenance":25,"popularity":0,"security":25,"maturity":12,"community":0},"deprecated":false,"max_score":100},"vulnerabilities":{"count":0,"critical":0,"high":0,"medium":0,"low":0,"details":[]},"versions":{"latest":"2.1.1","total_count":27,"recent":["1.8.1","1.8.2","1.9.0","1.9.1","1.9.2","1.9.3.dev2","1.10.0","1.10.2","1.10.3","1.10.4","1.11.0","1.12.0","1.12.1","1.12.2","2.0.0","2.0.1","2.0.2","2.0.3","2.1.0","2.1.1"]},"metadata":{"deprecated":false,"deprecated_message":null,"maintainers_count":0,"first_published":null,"last_published":"2026-04-17T21:01:47.065868Z","dependencies_count":127,"dependencies":["alphadia-search-rs<2,>=1","alpharaw>=0.3.1","alphatims>=1.0.8","alphabase>=1.5.0","peptdeep>=1.4.1","directlfq>=0.2.19","quantselect>=0.1.3","argparse","seaborn","rocket_fft","xxhash","torchmetrics","transformers","pyarrow>=20.0.0","pandas<3","numpy<2","scipy==1.12.0","llvmlite<0.46.0; sys_platform == \"darwin\" and platform_machine == \"x86_64\"","alphabase==1.7.1; extra == \"stable\"","alphadia-search-rs==1.1.1; extra == \"stable\"","alpharaw==0.4.7; extra == \"stable\"","alphatims==1.0.9; extra == \"stable\"","argparse==1.4.0; extra == \"stable\"","biopython==1.85; extra == \"stable\"","certifi==2025.1.31; extra == \"stable\"","cffi==1.17.1; extra == \"stable\"","charset-normalizer==3.4.1; extra == \"stable\"","click==8.1.8; extra == \"stable\"","clr-loader==0.2.7.post0; extra == \"stable\"","contextlib2==21.6.0; extra == \"stable\"","contourpy==1.3.1; extra == \"stable\"","cycler==0.12.1; extra == \"stable\"","dill==0.3.9; extra == \"stable\"","directlfq==0.3.1; extra == \"stable\"","filelock==3.18.0; extra == \"stable\"","fonttools==4.57.0; extra == \"stable\"","fsspec==2025.3.2; extra == \"stable\"","h5py==3.13.0; extra == \"stable\"","huggingface-hub==0.30.2; extra == \"stable\"","idna==3.10; extra == \"stable\"","jinja2==3.1.6; extra == \"stable\"","joblib==1.4.2; extra == \"stable\"","kiwisolver==1.4.8; extra == \"stable\"","lightning-utilities==0.14.3; extra == \"stable\"","llvmlite==0.44.0; extra == \"stable\"","lxml==5.3.2; extra == \"stable\"","markupsafe==3.0.2; extra == \"stable\"","matplotlib==3.10.1; extra == \"stable\"","mpmath==1.3.0; extra == \"stable\"","multiprocess==0.70.17; extra == \"stable\"","networkx==3.4.2; extra == \"stable\"","numba==0.61.2; extra == \"stable\"","numpy==1.26.4; extra == \"stable\"","nvidia-cublas-cu12==12.4.5.8; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cuda-cupti-cu12==12.4.127; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cuda-nvrtc-cu12==12.4.127; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cuda-runtime-cu12==12.4.127; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cudnn-cu12==9.1.0.70; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cufft-cu12==11.2.1.3; sys_platform == \"linux\" and extra == \"stable\"","nvidia-curand-cu12==10.3.5.147; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cusolver-cu12==11.6.1.9; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cusparse-cu12==12.3.1.170; sys_platform == \"linux\" and extra == \"stable\"","nvidia-cusparselt-cu12==0.6.2; sys_platform == \"linux\" and extra == \"stable\"","nvidia-nccl-cu12==2.21.5; sys_platform == \"linux\" and extra == \"stable\"","nvidia-nvjitlink-cu12==12.4.127; sys_platform == \"linux\" and extra == \"stable\"","nvidia-nvtx-cu12==12.4.127; sys_platform == \"linux\" and extra == \"stable\"","packaging==24.2; extra == \"stable\"","pandas==2.2.3; extra == \"stable\"","peptdeep==1.4.2; extra == \"stable\"","pillow==11.1.0; extra == \"stable\"","psutil==7.0.0; extra == \"stable\"","pyahocorasick==2.1.0; extra == \"stable\"","pyarrow==20.0.0; extra == \"stable\"","pycparser==2.22; extra == \"stable\"","pyparsing==3.2.3; extra == \"stable\"","pyteomics==4.7.5; extra == \"stable\"","python-dateutil==2.9.0.post0; extra == \"stable\"","pythonnet==3.0.5; extra == \"stable\"","pyyaml==6.0.2; extra == \"stable\"","pyzstd==0.16.2; extra == \"stable\"","quantselect==0.1.3; extra == \"stable\"","rdkit==2024.9.6; extra == \"stable\"","regex==2024.11.6; extra == \"stable\"","requests==2.32.3; extra == \"stable\"","rocket-fft==0.2.5; extra == \"stable\"","safetensors==0.5.3; extra == \"stable\"","scikit-learn==1.6.1; extra == \"stable\"","scipy==1.12.0; extra == \"stable\"","seaborn==0.13.2; extra == \"stable\"","setuptools==78.1.0; extra == \"stable\"","six==1.17.0; extra == \"stable\"","sympy==1.13.1; extra == \"stable\"","threadpoolctl==3.6.0; extra == \"stable\"","tokenizers==0.21.1; extra == \"stable\"","torch==2.6.0; (sys_platform != \"darwin\" or platform_machine != \"x86_64\") and extra == \"stable\"","torchmetrics==1.7.1; extra == \"stable\"","tqdm==4.67.1; extra == \"stable\"","transformers==4.51.2; extra == \"stable\"","triton==3.2.0; sys_platform == \"linux\" and extra == \"stable\"","typing-extensions==4.13.2; extra == \"stable\"","tzdata==2025.2; extra == \"stable\"","urllib3==2.4.0; extra == \"stable\"","xxhash==3.5.0; extra == \"stable\"","torch==2.2.2; (sys_platform == \"darwin\" and platform_machine == \"x86_64\") and extra == \"stable\"","coverage; extra == \"tests\"","coverage-badge; extra == \"tests\"","pytest; extra == \"tests\"","nbmake; extra == \"tests\"","uv; extra == \"tests\"","sphinx-rtd-theme; extra == \"docs\"","nbsphinx; extra == \"docs\"","myst_parser; extra == \"docs\"","sphinx_design; extra == \"docs\"","furo; extra == \"docs\"","pandoc; extra == \"docs\"","pre-commit==4.3.0; extra == \"development\"","coverage; extra == \"development\"","coverage-badge; extra == \"development\"","pytest; extra == \"development\"","nbmake; extra == \"development\"","uv; extra == \"development\"","sphinx-rtd-theme; extra == \"development\"","nbsphinx; extra == \"development\"","myst_parser; extra == \"development\"","sphinx_design; extra == \"development\"","furo; extra == \"development\"","pandoc; extra == \"development\""]},"github_stats":null,"bundle":null,"typescript":null,"known_issues":{"bugs_count":0,"bugs_severity":{},"status_breakdown":{},"link":null,"scope":"none"},"historical_compromise":null,"recommendation":{"action":"safe_to_use","issues":[],"use_version":"2.1.1","version_hint":null,"summary":"alphadia@2.1.1 is safe to use (health: 62/100)"},"version_scoped":null,"requested_version":null,"_cache":"miss","_response_ms":414,"_powered_by":"depscope.dev — free package intelligence for AI agents","typosquat":{"is_suspected":false},"maintainer_trust":{"available":false},"malicious":{"is_malicious":false},"scorecard":{"available":false},"quality":{"available":false},"version_history_summary":{"total_versions":20,"first_release_age_days":null,"last_release_days_ago":11,"avg_days_between_releases":null,"release_velocity":"active"}}