{"package":"phyr","ecosystem":"cran","latest_version":"1.1.3","description":"Model Based Phylogenetic Analysis. A collection of functions to do model-based phylogenetic analysis. It includes functions to calculate community phylogenetic diversity, to estimate correlations among functional traits while accounting for phylogenetic relationships, and to fit phylogenetic generalized linear mixed models. The Bayes","license":"GPL-3","license_risk":"strong_copyleft","commercial_use_notes":"GPL-3.0: derivative works must release source under GPL; includes explicit patent grant.","homepage":"https://daijiang.github.io/phyr/","repository":"https://github.com/daijiang/phyr/","downloads_weekly":2683,"health":{"score":49,"risk":"high","breakdown":{"maintenance":15,"popularity":6,"security":25,"maturity":0,"community":3},"deprecated":false,"max_score":100},"vulnerabilities":{"count":0,"critical":0,"high":0,"medium":0,"low":0,"details":[]},"versions":{"latest":"1.1.3","total_count":0,"recent":[]},"metadata":{"deprecated":false,"deprecated_message":null,"maintainers_count":1,"first_published":"2025-11-11 08:57:46","last_published":"2025-11-11T07:30:02+00:00","dependencies_count":13,"dependencies":["stats","ape","Rcpp","Matrix","methods","graphics","dplyr","lme4","nloptr","gridExtra","mvtnorm","latticeExtra","tidyr"]},"github_stats":{"stars":36,"forks":11,"open_issues":34,"is_archived":false,"pushed_at":"2025-11-10T22:09:45Z","subscribers_count":5},"bundle":null,"typescript":null,"known_issues":{"bugs_count":0,"bugs_severity":{},"status_breakdown":{},"link":null,"scope":"none"},"historical_compromise":null,"recommendation":{"action":"safe_to_use","issues":[],"use_version":"1.1.3","version_hint":null,"summary":"phyr@1.1.3 is safe to use (health: 49/100)"},"version_scoped":null,"requested_version":null,"_cache":"miss","_response_ms":617,"_powered_by":"depscope.dev — free package intelligence for AI agents","typosquat":{"is_suspected":false},"maintainer_trust":{"available":false},"malicious":{"is_malicious":false},"scorecard":{"available":false},"quality":{"available":false}}