{"package":"r-cooccur","ecosystem":"conda","latest_version":"1.3","description":"This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.","license":"GPL-2","license_risk":"strong_copyleft","commercial_use_notes":"GPL-2.0: derivative works must release source under GPL; static linking forces disclosure.","homepage":"https://CRAN.R-project.org/package=cooccur","repository":"","downloads_weekly":272,"health":{"score":49,"risk":"high","breakdown":{"maintenance":10,"popularity":3,"security":25,"maturity":9,"community":2},"deprecated":false,"max_score":100},"vulnerabilities":{"count":0,"critical":0,"high":0,"medium":0,"low":0,"details":[]},"versions":{"latest":"1.3","total_count":1,"recent":["1.3"]},"metadata":{"deprecated":false,"deprecated_message":null,"maintainers_count":1,"first_published":"2021-05-27 04:05:37.595000+00:00","last_published":"2025-09-24 10:26:17.650000+00:00","dependencies_count":0,"dependencies":[]},"github_stats":null,"bundle":null,"typescript":null,"known_issues":{"bugs_count":0,"bugs_severity":{},"status_breakdown":{},"link":null,"scope":"none"},"historical_compromise":null,"recommendation":{"action":"use_with_caution","issues":["Moderate health score (49/100) — verify manually"],"use_version":"1.3","version_hint":null,"summary":"r-cooccur@1.3 low health (49/100) — consider alternatives"},"version_scoped":null,"_meta":{"endpoint":"check","tier":"full","philosophy":"DepScope is free. Use the cheapest endpoint that answers your real question.","cheaper_alternatives":[{"endpoint":"/api/exists/conda/r-cooccur","tokens_estimated":12,"use_when":"you only need to know if the package exists (hallucination guard)"},{"endpoint":"/api/health/conda/r-cooccur","tokens_estimated":80,"use_when":"you only need a 0-100 score for go/no-go (>=70 = safe)"},{"endpoint":"/api/prompt/conda/r-cooccur","tokens_estimated":280,"use_when":"you want a plain-text LLM-friendly brief instead of JSON"},{"endpoint":"POST /api/check_bulk","tokens_estimated":60,"use_when":"you have 5+ packages to check; sends one round-trip instead of N"}],"docs":"https://depscope.dev/integrate","hint_bulk":"You've called /api/check 10 times in 60s. Save bandwidth + tokens with POST /api/check_bulk (1 round-trip for N pkgs)."},"requested_version":null,"_cache":"miss","_response_ms":613,"_powered_by":"depscope.dev — free package intelligence for AI agents","typosquat":{"is_suspected":false},"maintainer_trust":{"available":false},"malicious":{"is_malicious":false},"scorecard":{"available":false},"quality":{"available":false},"version_history_summary":{"total_versions":1,"first_release_age_days":1802,"last_release_days_ago":220,"avg_days_between_releases":null,"release_velocity":"moderate"}}